SNP Detail For rs79942555
1.Mapping Information
Human SNP ID rs79942555
Human chromosome chr5
Human SNP position 43520422
Pig chromosome chr16
Pig SNP position 29582307
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region5p12
Chromosome idchr5
Chromosome position43520422
Reported geneIntergenic
Mapped geneLOC105374749 - PAIP1
Upstream gene id105374749
Downstream gene id10605
SNP gene ids
Upstream gene distance568
Downstream gene distance5845
SNP risk allelers79942555-T
SNPsrs79942555
Merged0
SNP id current79942555
Contextintron_variant
Intergenic1
Allele frequency0.964
P value0.000002
Pvalue mlog5.69897000433601
P value text(AA)
Or beta0.075
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265