SNP Detail For rs7986704
1.Mapping Information
Human SNP ID rs7986704
Human chromosome chr13
Human SNP position 59705412
Pig chromosome chr11
Pig SNP position 34268862
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region13q21.2
Chromosome idchr13
Chromosome position59705412
Reported geneNR
Mapped geneDIAPH3
Upstream gene id
Downstream gene id
SNP gene ids81624
Upstream gene distance
Downstream gene distance
SNP risk allelers7986704-T
SNPsrs7986704
Merged0
SNP id current7986704
Contextintron_variant
Intergenic0
Allele frequency0.0562
P value0.000004
Pvalue mlog5.39794000867203
P value text(Trans-16:1n-7, EA)
Or beta0.0051
%95 Ci[0.0029-0.0073] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans-16:1n-7 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006822
Study accessionGCST002721