Human SNP ID | rs7985891 |
---|---|
Human chromosome | chr13 |
Human SNP position | 93226778 |
Pig chromosome | chr11 |
Pig SNP position | 68383456 |
PubMed ID | 24554482 |
---|---|
Journal | J Neurovirol |
Link | www.ncbi.nlm.nih.gov/pubmed/24554482 |
Study | Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384. |
Disease/Trait | Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 2 peripheral neuropathy) |
Initial sample | 19 European ancestry cases, 30 African American cases, 9 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls |
Replication sample | NA |
Region | 13q31.3 |
Chromosome id | chr13 |
Chromosome position | 93226778 |
Reported gene | GPC6 |
Mapped gene | LINC00363 - GPC6 |
Upstream gene id | 104326053 |
Downstream gene id | 10082 |
SNP gene ids | |
Upstream gene distance | 168852 |
Downstream gene distance | 47 |
SNP risk allele | rs7985891-? |
SNPs | rs7985891 |
Merged | 0 |
SNP id current | 7985891 |
Context | non_coding_transcript_exon_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (EA) |
Or beta | 38.2 |
%95 Ci | [NR] |
Platform | Illumina [936149] |
CNV | N |
Mapped trait | response to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100 |
Study accession | GCST002365 |