SNP Detail For rs79828856
1.Mapping Information
Human SNP ID rs79828856
Human chromosome chr18
Human SNP position 37456867
Pig chromosome chr6
Pig SNP position 114085362
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region18q12.2
Chromosome idchr18
Chromosome position37456867
Reported geneNR
Mapped geneCELF4
Upstream gene id
Downstream gene id
SNP gene ids56853
Upstream gene distance
Downstream gene distance
SNP risk allelers79828856-?
SNPsrs79828856
Merged
SNP id current79828856
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000008
Pvalue mlog7.09691001300805
P value text(Japanese)
Or beta0.6584
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956