SNP Detail For rs7982677
1.Mapping Information
Human SNP ID rs7982677
Human chromosome chr13
Human SNP position 92336070
Pig chromosome chr11
Pig SNP position 67505922
2.Annotation Information
PubMed ID23297363
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23297363
StudyGenome-wide association study identifies loci on 12q24 and 13q32 associated with tetralogy of Fallot.
Disease/TraitTetralogy of Fallot
Initial sample835 European ancestry cases, 5,159 European ancestry controls
Replication sample798 European ancestry cases, 2,931 European ancestry controls
Region13q31.3
Chromosome idchr13
Chromosome position92336070
Reported geneGPC5
Mapped geneGPC5
Upstream gene id
Downstream gene id
SNP gene ids2262
Upstream gene distance
Downstream gene distance
SNP risk allelers7982677-A
SNPsrs7982677
Merged0
SNP id current7982677
Contextintron_variant
Intergenic0
Allele frequency0.281
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.288
%95 Ci[1.152-1.441]
PlatformIllumina [516131]
CNVN
Mapped traittetralogy of fallot
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0001636
Study accessionGCST001807