Human SNP ID | rs7980687 |
---|---|
Human chromosome | chr12 |
Human SNP position | 123338164 |
Pig chromosome | chr14 |
Pig SNP position | 31269849 |
PubMed ID | 22504419 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504419 |
Study | Common variants at 12q15 and 12q24 are associated with infant head circumference. |
Disease/Trait | Head circumference (infant) |
Initial sample | 10,768 European ancestry infants |
Replication sample | 8,321 European ancestry infants |
Region | 12q24.31 |
Chromosome id | chr12 |
Chromosome position | 123338164 |
Reported gene | SBNO1 |
Mapped gene | SBNO1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55206 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7980687-A |
SNPs | rs7980687 |
Merged | 0 |
SNP id current | 7980687 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.000000008 |
Pvalue mlog | 8.09691001300805 |
P value text | |
Or beta | 0.074 |
%95 Ci | [0.049-0.099] SD increase |
Platform | Affymetrix, Illumina [~ 2400000] (imputed) |
CNV | N |
Mapped trait | infant head circumference |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004577 |
Study accession | GCST001484 |
PubMed ID | 25201988 |
Journal | Proc Natl Acad Sci U S A |
Link | www.ncbi.nlm.nih.gov/pubmed/25201988 |
Study | Common genetic variants associated with cognitive performance identified using the proxy-phenotype method. |
Disease/Trait | Educational attainment |
Initial sample | 106,736 European ancestry individuals |
Replication sample | NA |
Region | 12q24.31 |
Chromosome id | chr12 |
Chromosome position | 123338164 |
Reported gene | SBNO1, SETD8, RILPL2, C12orf65, MPHOSPH9, SNRNP35, RILPL1, PITPNM2, TMED2 |
Mapped gene | SBNO1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55206 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7980687-A |
SNPs | rs7980687 |
Merged | 0 |
SNP id current | 7980687 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.2 |
P value | 0.00000007 |
Pvalue mlog | 7.15490195998574 |
P value text | |
Or beta | 0.029 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | self reported educational attainment |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004784 |
Study accession | GCST002598 |
PubMed ID | 25282103 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25282103 |
Study | Defining the role of common variation in the genomic and biological architecture of adult human height. |
Disease/Trait | Height |
Initial sample | 253,288 European ancestry individuals |
Replication sample | 80,067 European ancestry individuals |
Region | 12q24.31 |
Chromosome id | chr12 |
Chromosome position | 123338164 |
Reported gene | SBNO1 |
Mapped gene | SBNO1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55206 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7980687-A |
SNPs | rs7980687 |
Merged | 0 |
SNP id current | 7980687 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.205 |
P value | 1E-26 |
Pvalue mlog | 26 |
P value text | |
Or beta | 0.039 |
%95 Ci | [0.031-0.047] unit increase |
Platform | Affymetrix, Illumina, Perlegen [2550858] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002647 |