SNP Detail For rs7979673
1.Mapping Information
Human SNP ID rs7979673
Human chromosome chr12
Human SNP position 65833477
Pig chromosome chr5
Pig SNP position 33384664
2.Annotation Information
PubMed ID21998595
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21998595
StudyIdentification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry.
Disease/TraitHeight
Initial sample20,427 African ancestry individuals
Replication sampleUp to 16,436 African American individuals
Region12q14.3
Chromosome idchr12
Chromosome position65833477
Reported geneHMGA2
Mapped geneHMGA2
Upstream gene id
Downstream gene id
SNP gene ids8091
Upstream gene distance
Downstream gene distance
SNP risk allelers7979673-T
SNPsrs7979673
Merged0
SNP id current7979673
Contextintron_variant
Intergenic0
Allele frequency0.32
P value0.0000000007
Pvalue mlog9.15490195998574
P value text
Or beta0.058
%95 Ci[0.038-0.078] unit decrease
PlatformAffymetrix, Illumina [3310998] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001263