Human SNP ID | rs7979673 |
---|---|
Human chromosome | chr12 |
Human SNP position | 65833477 |
Pig chromosome | chr5 |
Pig SNP position | 33384664 |
PubMed ID | 21998595 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21998595 |
Study | Identification, replication, and fine-mapping of Loci associated with adult height in individuals of african ancestry. |
Disease/Trait | Height |
Initial sample | 20,427 African ancestry individuals |
Replication sample | Up to 16,436 African American individuals |
Region | 12q14.3 |
Chromosome id | chr12 |
Chromosome position | 65833477 |
Reported gene | HMGA2 |
Mapped gene | HMGA2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 8091 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7979673-T |
SNPs | rs7979673 |
Merged | 0 |
SNP id current | 7979673 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.0000000007 |
Pvalue mlog | 9.15490195998574 |
P value text | |
Or beta | 0.058 |
%95 Ci | [0.038-0.078] unit decrease |
Platform | Affymetrix, Illumina [3310998] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST001263 |