SNP Detail For rs7978895
1.Mapping Information
Human SNP ID rs7978895
Human chromosome chr12
Human SNP position 43176712
Pig chromosome chr5
Pig SNP position 77025930
2.Annotation Information
PubMed ID25760438
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25760438
StudyFirst genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls
Replication sampleNA
Region12q12
Chromosome idchr12
Chromosome position43176712
Reported geneADAMTS20
Mapped geneLOC105369740 - ADAMTS20
Upstream gene id105369740
Downstream gene id80070
SNP gene ids
Upstream gene distance12892
Downstream gene distance176131
SNP risk allelers7978895-?
SNPsrs7978895
Merged0
SNP id current7978895
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.14
%95 Ci[0.081-0.199] unit increase
PlatformIllumina [1075436] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002806