Human SNP ID | rs7978895 |
---|---|
Human chromosome | chr12 |
Human SNP position | 43176712 |
Pig chromosome | chr5 |
Pig SNP position | 77025930 |
PubMed ID | 25760438 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25760438 |
Study | First genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes. |
Disease/Trait | Type 2 diabetes |
Initial sample | 89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls |
Replication sample | NA |
Region | 12q12 |
Chromosome id | chr12 |
Chromosome position | 43176712 |
Reported gene | ADAMTS20 |
Mapped gene | LOC105369740 - ADAMTS20 |
Upstream gene id | 105369740 |
Downstream gene id | 80070 |
SNP gene ids | |
Upstream gene distance | 12892 |
Downstream gene distance | 176131 |
SNP risk allele | rs7978895-? |
SNPs | rs7978895 |
Merged | 0 |
SNP id current | 7978895 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 0.14 |
%95 Ci | [0.081-0.199] unit increase |
Platform | Illumina [1075436] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST002806 |