SNP Detail For rs79757846
1.Mapping Information
Human SNP ID rs79757846
Human chromosome chr3
Human SNP position 106575615
Pig chromosome chr13
Pig SNP position 161908665
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region3q13.12
Chromosome idchr3
Chromosome position106575615
Reported geneNR
Mapped geneLOC101929485
Upstream gene id
Downstream gene id
SNP gene ids101929485
Upstream gene distance
Downstream gene distance
SNP risk allelers79757846-?
SNPsrs79757846
Merged
SNP id current79757846
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text(EA)
Or beta0.9748
%95 Ci[0.57-1.38] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956