SNP Detail For rs796825
1.Mapping Information
Human SNP ID rs796825
Human chromosome chr3
Human SNP position 120298633
Pig chromosome chr13
Pig SNP position 149257093
2.Annotation Information
PubMed ID22174851
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22174851
StudyGenomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure.
Disease/TraitHIV-1 susceptibility
Initial sample496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples
Replication sampleNA
Region3q13.33
Chromosome idchr3
Chromosome position120298633
Reported geneLRRC58
Mapped geneLOC105374066 - LOC442087
Upstream gene id105374066
Downstream gene id442087
SNP gene ids
Upstream gene distance9437
Downstream gene distance7929
SNP risk allelers796825-?
SNPsrs796825
Merged0
SNP id current796825
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta
%95 Ci
PlatformIllumina [990115]
CNVN
Mapped traitHIV-1 infection, Susceptibility to viral and mycobacterial infections
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.orpha.net/ORDO/Orphanet_391311
Study accessionGCST001353