Human SNP ID | rs796825 |
---|---|
Human chromosome | chr3 |
Human SNP position | 120298633 |
Pig chromosome | chr13 |
Pig SNP position | 149257093 |
PubMed ID | 22174851 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22174851 |
Study | Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. |
Disease/Trait | HIV-1 susceptibility |
Initial sample | 496 African ancestry cases and 302 African ancestry exposed controls from serodiscordant couples |
Replication sample | NA |
Region | 3q13.33 |
Chromosome id | chr3 |
Chromosome position | 120298633 |
Reported gene | LRRC58 |
Mapped gene | LOC105374066 - LOC442087 |
Upstream gene id | 105374066 |
Downstream gene id | 442087 |
SNP gene ids | |
Upstream gene distance | 9437 |
Downstream gene distance | 7929 |
SNP risk allele | rs796825-? |
SNPs | rs796825 |
Merged | 0 |
SNP id current | 796825 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [990115] |
CNV | N |
Mapped trait | HIV-1 infection, Susceptibility to viral and mycobacterial infections |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.orpha.net/ORDO/Orphanet_391311 |
Study accession | GCST001353 |