SNP Detail For rs7964407
1.Mapping Information
Human SNP ID rs7964407
Human chromosome chr12
Human SNP position 28040056
Pig chromosome chr5
Pig SNP position 49279664
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region12p11.22
Chromosome idchr12
Chromosome position28040056
Reported geneNR
Mapped geneLOC105369710
Upstream gene id
Downstream gene id
SNP gene ids105369710
Upstream gene distance
Downstream gene distance
SNP risk allelers7964407-G
SNPsrs7964407
Merged0
SNP id current7964407
Contextintergenic_variant
Intergenic0
Allele frequency0.620613410769915
P value0.000006
Pvalue mlog5.22184874961635
P value text(IGP8)
Or beta0.2061
%95 Ci[0.12-0.3] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848