SNP Detail For rs79588679
1.Mapping Information
Human SNP ID rs79588679
Human chromosome chr18
Human SNP position 22327807
Pig chromosome chr6
Pig SNP position 99906094
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitLDL cholesterol
Initial sampleup 62,166 European ancestry individuals
Replication sampleNA
Region18q11.2
Chromosome idchr18
Chromosome position22327807
Reported geneGATA6
Mapped geneLOC101927548 - LOC105372019
Upstream gene id101927548
Downstream gene id105372019
SNP gene ids
Upstream gene distance15792
Downstream gene distance20039
SNP risk allelers79588679-T
SNPsrs79588679
Merged
SNP id current79588679
Contextintergenic_variant
Intergenic1
Allele frequency0.17
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta0.049
%95 Ci[0.031-0.067] s.d. decrease
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002898