Human SNP ID | rs79588679 |
---|---|
Human chromosome | chr18 |
Human SNP position | 22327807 |
Pig chromosome | chr6 |
Pig SNP position | 99906094 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | up 62,166 European ancestry individuals |
Replication sample | NA |
Region | 18q11.2 |
Chromosome id | chr18 |
Chromosome position | 22327807 |
Reported gene | GATA6 |
Mapped gene | LOC101927548 - LOC105372019 |
Upstream gene id | 101927548 |
Downstream gene id | 105372019 |
SNP gene ids | |
Upstream gene distance | 15792 |
Downstream gene distance | 20039 |
SNP risk allele | rs79588679-T |
SNPs | rs79588679 |
Merged | |
SNP id current | 79588679 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.17 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 0.049 |
%95 Ci | [0.031-0.067] s.d. decrease |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002898 |