Human SNP ID | rs79578553 |
---|---|
Human chromosome | chr14 |
Human SNP position | 61129029 |
Pig chromosome | chr1 |
Pig SNP position | 211343282 |
PubMed ID | 25758996 |
---|---|
Journal | Eur J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25758996 |
Study | Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking. |
Disease/Trait | Red wine liking |
Initial sample | 398 Carlantino individuals, 751 Friuli Venezia Giulia individuals, 1,122 Val Borbera individuals |
Replication sample | 1,246 Erasmus Rucphen Family individuals, 353 Silk Road individuals |
Region | 14q23.1 |
Chromosome id | chr14 |
Chromosome position | 61129029 |
Reported gene | NR |
Mapped gene | LOC105378182 - TMEM30B |
Upstream gene id | 105378182 |
Downstream gene id | 161291 |
SNP gene ids | |
Upstream gene distance | 6152 |
Downstream gene distance | 148341 |
SNP risk allele | rs79578553-A |
SNPs | rs79578553 |
Merged | 0 |
SNP id current | 79578553 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.14 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [6967159] (imputed) |
CNV | N |
Mapped trait | red wine liking measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006947 |
Study accession | GCST002803 |