SNP Detail For rs79578553
1.Mapping Information
Human SNP ID rs79578553
Human chromosome chr14
Human SNP position 61129029
Pig chromosome chr1
Pig SNP position 211343282
2.Annotation Information
PubMed ID25758996
JournalEur J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25758996
StudyGenome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking.
Disease/TraitRed wine liking
Initial sample398 Carlantino individuals, 751 Friuli Venezia Giulia individuals, 1,122 Val Borbera individuals
Replication sample1,246 Erasmus Rucphen Family individuals, 353 Silk Road individuals
Region14q23.1
Chromosome idchr14
Chromosome position61129029
Reported geneNR
Mapped geneLOC105378182 - TMEM30B
Upstream gene id105378182
Downstream gene id161291
SNP gene ids
Upstream gene distance6152
Downstream gene distance148341
SNP risk allelers79578553-A
SNPsrs79578553
Merged0
SNP id current79578553
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.14
%95 Ci[NR] unit decrease
PlatformIllumina [6967159] (imputed)
CNVN
Mapped traitred wine liking measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006947
Study accessionGCST002803