SNP Detail For rs7952106
1.Mapping Information
Human SNP ID rs7952106
Human chromosome chr11
Human SNP position 113553836
Pig chromosome chr9
Pig SNP position 46036775
2.Annotation Information
PubMed ID24058526
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24058526
StudyGenome-wide meta-analysis of systolic blood pressure in children with sickle cell disease.
Disease/TraitSystolic blood pressure in sickle cell anemia
Initial sample1617 African American cases
Replication sampleNA
Region11q23.2
Chromosome idchr11
Chromosome position113553836
Reported geneDRD2, MIR4301
Mapped geneLOC105369501 - TMPRSS5
Upstream gene id105369501
Downstream gene id80975
SNP gene ids
Upstream gene distance53098
Downstream gene distance133710
SNP risk allelers7952106-G
SNPsrs7952106
Merged0
SNP id current7952106
Contextregulatory_region_variant
Intergenic1
Allele frequency0.23
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta1.54
%95 Ci[0.93-2.15] mmHg increase
PlatformIllumina [1019297] (imputed)
CNVN
Mapped traitSickle cell anemia, systolic blood pressure
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_232, http://www.ebi.ac.uk/efo/EFO_0006335
Study accessionGCST002187