Human SNP ID | rs7952106 |
---|---|
Human chromosome | chr11 |
Human SNP position | 113553836 |
Pig chromosome | chr9 |
Pig SNP position | 46036775 |
PubMed ID | 24058526 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24058526 |
Study | Genome-wide meta-analysis of systolic blood pressure in children with sickle cell disease. |
Disease/Trait | Systolic blood pressure in sickle cell anemia |
Initial sample | 1617 African American cases |
Replication sample | NA |
Region | 11q23.2 |
Chromosome id | chr11 |
Chromosome position | 113553836 |
Reported gene | DRD2, MIR4301 |
Mapped gene | LOC105369501 - TMPRSS5 |
Upstream gene id | 105369501 |
Downstream gene id | 80975 |
SNP gene ids | |
Upstream gene distance | 53098 |
Downstream gene distance | 133710 |
SNP risk allele | rs7952106-G |
SNPs | rs7952106 |
Merged | 0 |
SNP id current | 7952106 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.23 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 1.54 |
%95 Ci | [0.93-2.15] mmHg increase |
Platform | Illumina [1019297] (imputed) |
CNV | N |
Mapped trait | Sickle cell anemia, systolic blood pressure |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_232, http://www.ebi.ac.uk/efo/EFO_0006335 |
Study accession | GCST002187 |