SNP Detail For rs7952067
1.Mapping Information
Human SNP ID rs7952067
Human chromosome chr11
Human SNP position 100550741
Pig chromosome chr9
Pig SNP position 35651425
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region11q22.1
Chromosome idchr11
Chromosome position100550741
Reported geneNR
Mapped geneCNTN5 - LOC440063
Upstream gene id53942
Downstream gene id440063
SNP gene ids
Upstream gene distance191856
Downstream gene distance115685
SNP risk allelers7952067-C
SNPsrs7952067
Merged0
SNP id current7952067
Contextintergenic_variant
Intergenic1
Allele frequency0.0738
P value0.000001
Pvalue mlog6
P value text(Trans/trans-18:2, EA)
Or beta0.0052
%95 Ci[0.003-0.0074] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans/trans-18:2 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826
Study accessionGCST002721