SNP Detail For rs79490558
1.Mapping Information
Human SNP ID rs79490558
Human chromosome chr13
Human SNP position 45312051
Pig chromosome JH118647-1
Pig SNP position 173865
2.Annotation Information
PubMed ID25760438
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25760438
StudyFirst genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls
Replication sampleNA
Region13q14.13
Chromosome idchr13
Chromosome position45312051
Reported geneGTF2F2, TPT1
Mapped geneGTF2F2 - TPT1
Upstream gene id2963
Downstream gene id7178
SNP gene ids
Upstream gene distance27162
Downstream gene distance21420
SNP risk allelers79490558-?
SNPsrs79490558
Merged0
SNP id current79490558
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta0.31
%95 Ci[0.17-0.45] unit increase
PlatformIllumina [1075436] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002806