Human SNP ID | rs7933433 |
---|---|
Human chromosome | chr11 |
Human SNP position | 128324555 |
Pig chromosome | chr9 |
Pig SNP position | 61359049 |
PubMed ID | 25903422 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 11q24.3 |
Chromosome id | chr11 |
Chromosome position | 128324555 |
Reported gene | ETS1 |
Mapped gene | LOC105369564 - LOC105369566 |
Upstream gene id | 105369564 |
Downstream gene id | 105369566 |
SNP gene ids | |
Upstream gene distance | 83114 |
Downstream gene distance | 88465 |
SNP risk allele | rs7933433-T |
SNPs | rs7933433 |
Merged | 0 |
SNP id current | 7933433 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (EA) |
Or beta | 1.11 |
%95 Ci | [1.06-1.16] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |
PubMed ID | 25903422 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25903422 |
Study | Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility. |
Disease/Trait | Psoriasis |
Initial sample | 3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls |
Replication sample | 5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls |
Region | 11q24.3 |
Chromosome id | chr11 |
Chromosome position | 128324555 |
Reported gene | ETS1 |
Mapped gene | LOC105369564 - LOC105369566 |
Upstream gene id | 105369564 |
Downstream gene id | 105369566 |
SNP gene ids | |
Upstream gene distance | 83114 |
Downstream gene distance | 88465 |
SNP risk allele | rs7933433-T |
SNPs | rs7933433 |
Merged | 0 |
SNP id current | 7933433 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.08 |
%95 Ci | [1.04-1.11] |
Platform | Illumina [up to 4778154] (imputed) |
CNV | N |
Mapped trait | psoriasis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000676 |
Study accession | GCST002874 |