SNP Detail For rs7933433
1.Mapping Information
Human SNP ID rs7933433
Human chromosome chr11
Human SNP position 128324555
Pig chromosome chr9
Pig SNP position 61359049
2.Annotation Information
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region11q24.3
Chromosome idchr11
Chromosome position128324555
Reported geneETS1
Mapped geneLOC105369564 - LOC105369566
Upstream gene id105369564
Downstream gene id105369566
SNP gene ids
Upstream gene distance83114
Downstream gene distance88465
SNP risk allelers7933433-T
SNPsrs7933433
Merged0
SNP id current7933433
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(EA)
Or beta1.11
%95 Ci[1.06-1.16]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874
PubMed ID25903422
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25903422
StudyGenome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility.
Disease/TraitPsoriasis
Initial sample3,496 European ancestry cases, 5,186 European ancestry controls, 1,588 Chinese ancestry cases, 3,546 Chinese ancestry controls
Replication sample5,134 European ancestry cases, 5,633 European ancestry controls, 5,151 Chinese ancestry cases, 5,152 Chinese ancestry controls
Region11q24.3
Chromosome idchr11
Chromosome position128324555
Reported geneETS1
Mapped geneLOC105369564 - LOC105369566
Upstream gene id105369564
Downstream gene id105369566
SNP gene ids
Upstream gene distance83114
Downstream gene distance88465
SNP risk allelers7933433-T
SNPsrs7933433
Merged0
SNP id current7933433
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.08
%95 Ci[1.04-1.11]
PlatformIllumina [up to 4778154] (imputed)
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002874