Human SNP ID | rs7931342 |
---|---|
Human chromosome | chr11 |
Human SNP position | 69227030 |
Pig chromosome | chr2 |
Pig SNP position | 2624045 |
PubMed ID | 18264097 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18264097 |
Study | Multiple newly identified loci associated with prostate cancer susceptibility. |
Disease/Trait | Prostate cancer |
Initial sample | 1,854 European ancestry cases, 1,894 European ancestry controls |
Replication sample | 3,268 European ancestry cases, 3,366 European ancestry controls |
Region | 11q13.3 |
Chromosome id | chr11 |
Chromosome position | 69227030 |
Reported gene | intergenic |
Mapped gene | LOC105369366 - LOC105369367 |
Upstream gene id | 105369366 |
Downstream gene id | 105369367 |
SNP gene ids | |
Upstream gene distance | 49054 |
Downstream gene distance | 1719 |
SNP risk allele | rs7931342-G |
SNPs | rs7931342 |
Merged | 0 |
SNP id current | 7931342 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.51 |
P value | 0.000000000002 |
Pvalue mlog | 11.698970004336 |
P value text | |
Or beta | 1.19 |
%95 Ci | [1.11-1.27] |
Platform | Illumina [541129] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST000152 |
PubMed ID | 24740154 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24740154 |
Study | Genome-wide association scan for variants associated with early-onset prostate cancer. |
Disease/Trait | Prostate cancer (early onset) |
Initial sample | 931 European ancestry cases, 4,120 European ancestry controls |
Replication sample | 2,571 European ancestry cases, 921 European ancestry controls |
Region | 11q13.3 |
Chromosome id | chr11 |
Chromosome position | 69227030 |
Reported gene | NR |
Mapped gene | LOC105369366 - LOC105369367 |
Upstream gene id | 105369366 |
Downstream gene id | 105369367 |
SNP gene ids | |
Upstream gene distance | 49054 |
Downstream gene distance | 1719 |
SNP risk allele | rs7931342-G |
SNPs | rs7931342 |
Merged | 0 |
SNP id current | 7931342 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.3 |
%95 Ci | [NR] |
Platform | Illumina [2639562] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002413 |