SNP Detail For rs7931342
1.Mapping Information
Human SNP ID rs7931342
Human chromosome chr11
Human SNP position 69227030
Pig chromosome chr2
Pig SNP position 2624045
2.Annotation Information
PubMed ID18264097
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18264097
StudyMultiple newly identified loci associated with prostate cancer susceptibility.
Disease/TraitProstate cancer
Initial sample1,854 European ancestry cases, 1,894 European ancestry controls
Replication sample3,268 European ancestry cases, 3,366 European ancestry controls
Region11q13.3
Chromosome idchr11
Chromosome position69227030
Reported geneintergenic
Mapped geneLOC105369366 - LOC105369367
Upstream gene id105369366
Downstream gene id105369367
SNP gene ids
Upstream gene distance49054
Downstream gene distance1719
SNP risk allelers7931342-G
SNPsrs7931342
Merged0
SNP id current7931342
Contextintergenic_variant
Intergenic1
Allele frequency0.51
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta1.19
%95 Ci[1.11-1.27]
PlatformIllumina [541129]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST000152
PubMed ID24740154
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24740154
StudyGenome-wide association scan for variants associated with early-onset prostate cancer.
Disease/TraitProstate cancer (early onset)
Initial sample931 European ancestry cases, 4,120 European ancestry controls
Replication sample2,571 European ancestry cases, 921 European ancestry controls
Region11q13.3
Chromosome idchr11
Chromosome position69227030
Reported geneNR
Mapped geneLOC105369366 - LOC105369367
Upstream gene id105369366
Downstream gene id105369367
SNP gene ids
Upstream gene distance49054
Downstream gene distance1719
SNP risk allelers7931342-G
SNPsrs7931342
Merged0
SNP id current7931342
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta1.3
%95 Ci[NR]
PlatformIllumina [2639562] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002413