SNP Detail For rs7930114
1.Mapping Information
Human SNP ID rs7930114
Human chromosome chr11
Human SNP position 104170883
Pig chromosome chr9
Pig SNP position 38622999
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region11q22.3
Chromosome idchr11
Chromosome position104170883
Reported geneNR
Mapped genePDGFD - LOC102723879
Upstream gene id80310
Downstream gene id102723879
SNP gene ids
Upstream gene distance6584
Downstream gene distance23562
SNP risk allelers7930114-?
SNPsrs7930114
Merged
SNP id current7930114
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.4242
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956