SNP Detail For rs792975
1.Mapping Information
Human SNP ID rs792975
Human chromosome chr5
Human SNP position 172844004
Pig chromosome chr16
Pig SNP position 55704291
2.Annotation Information
PubMed ID23648065
JournalCancer Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23648065
StudyGenome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
Disease/TraitAdverse response to chemotherapy (neutropenia/leucopenia) (paclitaxel)
Initial sample218 Japanese ancestry cases, 364 Japanese controls
Replication sampleNA
Region5q35.1
Chromosome idchr5
Chromosome position172844004
Reported geneERGIC1
Mapped geneERGIC1
Upstream gene id
Downstream gene id
SNP gene ids57222
Upstream gene distance
Downstream gene distance
SNP risk allelers792975-T
SNPsrs792975
Merged0
SNP id current792975
Contextintron_variant
Intergenic0
Allele frequency0.519
P value0.000008
Pvalue mlog5.09691001300805
P value text(Allelic model)
Or beta1.746
%95 Ci[1.366-2.232]
PlatformIllumina [733202]
CNVN
Mapped traitresponse to paclitaxel, response to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_1901555, http://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001999