SNP Detail For rs791888
1.Mapping Information
Human SNP ID rs791888
Human chromosome chr10
Human SNP position 87652818
Pig chromosome chr14
Pig SNP position 108644399
2.Annotation Information
PubMed ID25886283
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25886283
StudyGenome-wide association study of serum minerals levels in children of different ethnic background.
Disease/TraitMagnesium levels
Initial sample2,317 European ancestry children, 1,283 African-American ancestry children
Replication sampleNA
Region10q23.2
Chromosome idchr10
Chromosome position87652818
Reported geneNR
Mapped geneLOC105378412
Upstream gene id
Downstream gene id
SNP gene ids105378412
Upstream gene distance
Downstream gene distance
SNP risk allelers791888-T
SNPsrs791888
Merged0
SNP id current791888
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta0.0243
%95 Ci[NR] mg/dl increase
PlatformIllumina [up to 509150]
CNVN
Mapped traitmagnesium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004845
Study accessionGCST002860
PubMed ID25886283
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25886283
StudyGenome-wide association study of serum minerals levels in children of different ethnic background.
Disease/TraitMagnesium levels
Initial sample2,317 European ancestry children, 1,283 African-American ancestry children
Replication sampleNA
Region10q23.2
Chromosome idchr10
Chromosome position87652818
Reported geneNR
Mapped geneLOC105378412
Upstream gene id
Downstream gene id
SNP gene ids105378412
Upstream gene distance
Downstream gene distance
SNP risk allelers791888-T
SNPsrs791888
Merged0
SNP id current791888
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(EA)
Or beta0.02742
%95 Ci(0.01614-0.03871) mg/dl increase
PlatformIllumina [up to 509150]
CNVN
Mapped traitmagnesium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004845
Study accessionGCST002860