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SNP Detail For rs79158673
1.Mapping Information
| Human SNP ID | rs79158673 |
|---|---|
| Human chromosome | chr3 |
| Human SNP position | 62457132 |
| Pig chromosome | chr13 |
| Pig SNP position | 48105137 |
2.Annotation Information
| PubMed ID | 26252872 |
|---|---|
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
| Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
| Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
| Initial sample | 472 European ancestry cases, 47 cases |
| Replication sample | NA |
| Region | 3p14.2 |
| Chromosome id | chr3 |
| Chromosome position | 62457132 |
| Reported gene | CADPS |
| Mapped gene | CADPS |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 8618 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs79158673-G |
| SNPs | rs79158673 |
| Merged | |
| SNP id current | 79158673 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.01 |
| P value | 0.0000000002 |
| Pvalue mlog | 9.69897000433601 |
| P value text | (EA) |
| Or beta | 0.4992 |
| %95 Ci | [0.35-0.65] unit increase |
| Platform | Illumina [~ 9000000] (imputed) |
| CNV | N |
| Mapped trait | cognitive impairment, cognitive decline measurement |
| Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
| Study accession | GCST003075 |
| PubMed ID | 26252872 |
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
| Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
| Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
| Initial sample | 472 European ancestry cases, 47 cases |
| Replication sample | NA |
| Region | 3p14.2 |
| Chromosome id | chr3 |
| Chromosome position | 62457132 |
| Reported gene | CADPS |
| Mapped gene | CADPS |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 8618 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs79158673-G |
| SNPs | rs79158673 |
| Merged | |
| SNP id current | 79158673 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.01 |
| P value | 0.0000000003 |
| Pvalue mlog | 9.52287874528033 |
| P value text | |
| Or beta | 0.4954 |
| %95 Ci | [0.34-0.65] unit increase |
| Platform | Illumina [~ 9000000] (imputed) |
| CNV | N |
| Mapped trait | cognitive impairment, cognitive decline measurement |
| Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
| Study accession | GCST003075 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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