Human SNP ID | rs7909791 |
---|---|
Human chromosome | chr10 |
Human SNP position | 103853420 |
Pig chromosome | chr14 |
Pig SNP position | 124657084 |
PubMed ID | 25663218 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25663218 |
Study | Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI. |
Disease/Trait | White matter hyperintensity burden |
Initial sample | 17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals |
Replication sample | NA |
Region | 10q24.33 |
Chromosome id | chr10 |
Chromosome position | 103853420 |
Reported gene | SH3PXD2A |
Mapped gene | SH3PXD2A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9644 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7909791-A |
SNPs | rs7909791 |
Merged | |
SNP id current | 7909791 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [14227402] (imputed) |
CNV | N |
Mapped trait | white matter hyperintensity measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005665 |
Study accession | GCST003013 |
PubMed ID | 25663218 |
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25663218 |
Study | Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI. |
Disease/Trait | White matter hyperintensity burden |
Initial sample | 17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals |
Replication sample | NA |
Region | 10q24.33 |
Chromosome id | chr10 |
Chromosome position | 103853420 |
Reported gene | SH3PXD2A |
Mapped gene | SH3PXD2A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9644 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7909791-A |
SNPs | rs7909791 |
Merged | |
SNP id current | 7909791 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | (EA) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [14227402] (imputed) |
CNV | N |
Mapped trait | white matter hyperintensity measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005665 |
Study accession | GCST003013 |