SNP Detail For rs79090407
1.Mapping Information
Human SNP ID rs79090407
Human chromosome chr16
Human SNP position 26505812
Pig chromosome chr3
Pig SNP position 20351337
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region16p12.1
Chromosome idchr16
Chromosome position26505812
Reported geneNR
Mapped geneLOC102723536 - LOC105371152
Upstream gene id102723536
Downstream gene id105371152
SNP gene ids
Upstream gene distance141755
Downstream gene distance78960
SNP risk allelers79090407-A
SNPsrs79090407
Merged
SNP id current79090407
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.12
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048