SNP Detail For rs7904985
1.Mapping Information
Human SNP ID rs7904985
Human chromosome chr10
Human SNP position 86356722
Pig chromosome chr14
Pig SNP position 94116347
2.Annotation Information
PubMed ID24121790
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24121790
StudyA genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus.
Disease/TraitBarrett__s esophagus
Initial sample2,416 European ancestry cases, 3,206 European ancestry controls
Replication sample759 European ancestry cases, 6,911 European ancestry controls
Region10q23.2
Chromosome idchr10
Chromosome position86356722
Reported geneNR
Mapped geneGRID1
Upstream gene id
Downstream gene id
SNP gene ids2894
Upstream gene distance
Downstream gene distance
SNP risk allelers7904985-T
SNPsrs7904985
Merged0
SNP id current7904985
Contextintron_variant
Intergenic0
Allele frequency0.29
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.17
%95 Ci[1.10-1.26]
PlatformIllumina [922031]
CNVN
Mapped traitBarrett__s esophagus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000280
Study accessionGCST002230