Human SNP ID | rs7904985 |
---|---|
Human chromosome | chr10 |
Human SNP position | 86356722 |
Pig chromosome | chr14 |
Pig SNP position | 94116347 |
PubMed ID | 24121790 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24121790 |
Study | A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus. |
Disease/Trait | Barrett__s esophagus |
Initial sample | 2,416 European ancestry cases, 3,206 European ancestry controls |
Replication sample | 759 European ancestry cases, 6,911 European ancestry controls |
Region | 10q23.2 |
Chromosome id | chr10 |
Chromosome position | 86356722 |
Reported gene | NR |
Mapped gene | GRID1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2894 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7904985-T |
SNPs | rs7904985 |
Merged | 0 |
SNP id current | 7904985 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.29 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.17 |
%95 Ci | [1.10-1.26] |
Platform | Illumina [922031] |
CNV | N |
Mapped trait | Barrett__s esophagus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000280 |
Study accession | GCST002230 |