SNP Detail For rs7897633
1.Mapping Information
Human SNP ID rs7897633
Human chromosome chr10
Human SNP position 51197961
Pig chromosome chr14
Pig SNP position 107451124
2.Annotation Information
PubMed ID25338677
JournalGenes Immun
Linkwww.ncbi.nlm.nih.gov/pubmed/25338677
StudyGenetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus.
Disease/TraitInterferon alpha levels in systemic lupus erythematosus
Initial sample88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases
Replication sample715 European ancestry cases, 450 African American cases
Region10q21.1
Chromosome idchr10
Chromosome position51197961
Reported genePRKG1, A1CF, CSTF2T
Mapped genePRKG1
Upstream gene id
Downstream gene id
SNP gene ids5592
Upstream gene distance
Downstream gene distance
SNP risk allelers7897633-?
SNPsrs7897633
Merged0
SNP id current7897633
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000003
Pvalue mlog7.52287874528033
P value text(EA)
Or beta1.6949153
%95 Ci[1.28-2.27]
PlatformIllumina [291943]
CNVN
Mapped traitinterferon alpha measurement, systemic lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006517, http://www.ebi.ac.uk/efo/EFO_0002690
Study accessionGCST002666