Human SNP ID | rs7897633 |
---|---|
Human chromosome | chr10 |
Human SNP position | 51197961 |
Pig chromosome | chr14 |
Pig SNP position | 107451124 |
PubMed ID | 25338677 |
---|---|
Journal | Genes Immun |
Link | www.ncbi.nlm.nih.gov/pubmed/25338677 |
Study | Genetic analysis of the pathogenic molecular sub-phenotype interferon-alpha identifies multiple novel loci involved in systemic lupus erythematosus. |
Disease/Trait | Interferon alpha levels in systemic lupus erythematosus |
Initial sample | 88 European ancestry high interferon alpha cases, 322 European ancestry low interferon alpha cases |
Replication sample | 715 European ancestry cases, 450 African American cases |
Region | 10q21.1 |
Chromosome id | chr10 |
Chromosome position | 51197961 |
Reported gene | PRKG1, A1CF, CSTF2T |
Mapped gene | PRKG1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5592 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7897633-? |
SNPs | rs7897633 |
Merged | 0 |
SNP id current | 7897633 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (EA) |
Or beta | 1.6949153 |
%95 Ci | [1.28-2.27] |
Platform | Illumina [291943] |
CNV | N |
Mapped trait | interferon alpha measurement, systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006517, http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST002666 |