SNP Detail For rs7896691
1.Mapping Information
Human SNP ID rs7896691
Human chromosome chr10
Human SNP position 3112981
Pig chromosome chr10
Pig SNP position 73585160
2.Annotation Information
PubMed ID22993228
JournalAnn Rheum Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/22993228
StudyNovel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.
Disease/TraitDisc degeneration (lumbar)
Initial sample4,683 European ancestry individuals
Replication sampleNA
Region10p15.2
Chromosome idchr10
Chromosome position3112981
Reported genePFKP
Mapped genePFKP
Upstream gene id
Downstream gene id
SNP gene ids5214
Upstream gene distance
Downstream gene distance
SNP risk allelers7896691-C
SNPsrs7896691
Merged0
SNP id current7896691
Contextintron_variant
Intergenic0
Allele frequency0.1
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.17
%95 Ci[0.10-0.24] unit increase
PlatformAffymetrix, Illumina [2552511] (imputed)
CNVN
Mapped traitlumbar disc degeneration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004994
Study accessionGCST001687