Human SNP ID | rs7896691 |
---|---|
Human chromosome | chr10 |
Human SNP position | 3112981 |
Pig chromosome | chr10 |
Pig SNP position | 73585160 |
PubMed ID | 22993228 |
---|---|
Journal | Ann Rheum Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/22993228 |
Study | Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects. |
Disease/Trait | Disc degeneration (lumbar) |
Initial sample | 4,683 European ancestry individuals |
Replication sample | NA |
Region | 10p15.2 |
Chromosome id | chr10 |
Chromosome position | 3112981 |
Reported gene | PFKP |
Mapped gene | PFKP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5214 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7896691-C |
SNPs | rs7896691 |
Merged | 0 |
SNP id current | 7896691 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.1 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.17 |
%95 Ci | [0.10-0.24] unit increase |
Platform | Affymetrix, Illumina [2552511] (imputed) |
CNV | N |
Mapped trait | lumbar disc degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004994 |
Study accession | GCST001687 |