SNP Detail For rs78944489
1.Mapping Information
Human SNP ID rs78944489
Human chromosome chr2
Human SNP position 73191915
Pig chromosome chr3
Pig SNP position 72788826
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region2p13.2
Chromosome idchr2
Chromosome position73191915
Reported geneNR
Mapped geneLOC105374801 - NOTO
Upstream gene id105374801
Downstream gene id344022
SNP gene ids
Upstream gene distance78082
Downstream gene distance10343
SNP risk allelers78944489-C
SNPsrs78944489
Merged
SNP id current78944489
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.1111112
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048