SNP Detail For rs78943174
1.Mapping Information
Human SNP ID rs78943174
Human chromosome chr3
Human SNP position 175534948
Pig chromosome chr13
Pig SNP position 122810237
2.Annotation Information
PubMed ID25939597
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25939597
StudyTwo susceptibility loci identified for prostate cancer aggressiveness.
Disease/TraitProstate cancer aggressiveness
Initial sample4,545 European ancestry cases
Replication sample7,973 European ancestry cases
Region3q26.31
Chromosome idchr3
Chromosome position175534948
Reported geneNAALADL2
Mapped geneNAALADL2
Upstream gene id
Downstream gene id
SNP gene ids254827
Upstream gene distance
Downstream gene distance
SNP risk allelers78943174-C
SNPsrs78943174
Merged0
SNP id current78943174
Contextintron_variant
Intergenic0
Allele frequency0.987
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta0.289
%95 Ci[0.19-0.39] unit increase
PlatformIllumina [1531807] (imputed)
CNVN
Mapped traitcancer aggressiveness measurement, Gleason score measurement, prostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006999, http://www.ebi.ac.uk/efo/EFO_0007000, http://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002886