Human SNP ID | rs78943174 |
---|---|
Human chromosome | chr3 |
Human SNP position | 175534948 |
Pig chromosome | chr13 |
Pig SNP position | 122810237 |
PubMed ID | 25939597 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25939597 |
Study | Two susceptibility loci identified for prostate cancer aggressiveness. |
Disease/Trait | Prostate cancer aggressiveness |
Initial sample | 4,545 European ancestry cases |
Replication sample | 7,973 European ancestry cases |
Region | 3q26.31 |
Chromosome id | chr3 |
Chromosome position | 175534948 |
Reported gene | NAALADL2 |
Mapped gene | NAALADL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 254827 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs78943174-C |
SNPs | rs78943174 |
Merged | 0 |
SNP id current | 78943174 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.987 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 0.289 |
%95 Ci | [0.19-0.39] unit increase |
Platform | Illumina [1531807] (imputed) |
CNV | N |
Mapped trait | cancer aggressiveness measurement, Gleason score measurement, prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006999, http://www.ebi.ac.uk/efo/EFO_0007000, http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002886 |