SNP Detail For rs7893279
1.Mapping Information
Human SNP ID rs7893279
Human chromosome chr10
Human SNP position 18456176
Pig chromosome chr10
Pig SNP position 49523871
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region10p12.31
Chromosome idchr10
Chromosome position18456176
Reported geneCACNB2
Mapped geneCACNB2
Upstream gene id
Downstream gene id
SNP gene ids783
Upstream gene distance
Downstream gene distance
SNP risk allelers7893279-T
SNPsrs7893279
Merged0
SNP id current7893279
Contextintron_variant
Intergenic0
Allele frequency0.889
P value0.000000000002
Pvalue mlog11.698970004336
P value text
Or beta1.125
%95 Ci[1.088-1.162]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region10p12.31
Chromosome idchr10
Chromosome position18456176
Reported geneNR
Mapped geneCACNB2
Upstream gene id
Downstream gene id
SNP gene ids783
Upstream gene distance
Downstream gene distance
SNP risk allelers7893279-T
SNPsrs7893279
Merged0
SNP id current7893279
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000006
Pvalue mlog10.2218487496163
P value text
Or beta1.12
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048