Human SNP ID | rs78925264 |
---|---|
Human chromosome | chr9 |
Human SNP position | 9015087 |
Pig chromosome | chr1 |
Pig SNP position | 238245880 |
PubMed ID | 24324551 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24324551 |
Study | Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. |
Disease/Trait | Antibody status in Tripanosoma cruzi seropositivity |
Initial sample | 580 Brazilian ancestry individuals |
Replication sample | NA |
Region | 9p23 |
Chromosome id | chr9 |
Chromosome position | 9015087 |
Reported gene | NR |
Mapped gene | PTPRD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5789 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs78925264-? |
SNPs | rs78925264 |
Merged | 0 |
SNP id current | 78925264 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5486770] (imputed) |
CNV | N |
Mapped trait | antibody measurement, Trypanosoma cruzi seropositivity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004556, http://www.ebi.ac.uk/efo/EFO_0005530 |
Study accession | GCST002280 |