SNP Detail For rs7892161
1.Mapping Information
Human SNP ID rs7892161
Human chromosome chrX
Human SNP position 132890476
Pig chromosome chrX
Pig SNP position 125025334
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (Mean PAL)
Initial sampleup to 4,032 European ancestry individuals
Replication sampleNA
RegionXq26.2
Chromosome idchrX
Chromosome position132890476
Reported geneHS6ST2
Mapped geneHS6ST2, LOC101928903
Upstream gene id
Downstream gene id
SNP gene ids90161, 101928903
Upstream gene distance
Downstream gene distance
SNP risk allelers7892161-T
SNPsrs7892161
Merged0
SNP id current7892161
Contextintron_variant
Intergenic0
Allele frequency0.54
P value0.000009
Pvalue mlog5.04575749056067
P value text(Age 20-60 years)
Or beta0.0413
%95 Ci[0.023-0.060] unit increase
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002127