SNP Detail For rs7890572
1.Mapping Information
Human SNP ID rs7890572
Human chromosome chrX
Human SNP position 29622701
Pig chromosome chrX
Pig SNP position 27725318
2.Annotation Information
PubMed ID20838585
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20838585
StudyLongitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.
Disease/TraitCardiovascular disease risk factors
Initial sample525 European ancestry individuals
Replication sample2,265 European ancestry individuals
RegionXp21.2
Chromosome idchrX
Chromosome position29622701
Reported geneIL1RAPL1
Mapped geneIL1RAPL1
Upstream gene id
Downstream gene id
SNP gene ids11141
Upstream gene distance
Downstream gene distance
SNP risk allelers7890572-G
SNPsrs7890572
Merged0
SNP id current7890572
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.0000001
Pvalue mlog7
P value text(triglycerides)
Or beta0.97
%95 Ci[0.62-1.32] % SD increase, SNPxAGE interaction
PlatformIllumina [545821]
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST000789