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SNP Detail For rs78857879
1.Mapping Information
| Human SNP ID | rs78857879 |
|---|---|
| Human chromosome | chr2 |
| Human SNP position | 55907964 |
| Pig chromosome | chr3 |
| Pig SNP position | 90152151 |
2.Annotation Information
| PubMed ID | 25663218 |
|---|---|
| Journal | Circ Cardiovasc Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25663218 |
| Study | Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI. |
| Disease/Trait | White matter hyperintensity burden |
| Initial sample | 17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals |
| Replication sample | NA |
| Region | 2p16.1 |
| Chromosome id | chr2 |
| Chromosome position | 55907964 |
| Reported gene | EFEMP1 |
| Mapped gene | EFEMP1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2202 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs78857879-A |
| SNPs | rs78857879 |
| Merged | |
| SNP id current | 78857879 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.1 |
| P value | 0.00000002 |
| Pvalue mlog | 7.69897000433601 |
| P value text | |
| Or beta | |
| %95 Ci | |
| Platform | Affymetrix, Illumina [14227402] (imputed) |
| CNV | N |
| Mapped trait | white matter hyperintensity measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005665 |
| Study accession | GCST003013 |
| PubMed ID | 25663218 |
| Journal | Circ Cardiovasc Genet |
| Link | www.ncbi.nlm.nih.gov/pubmed/25663218 |
| Study | Multiethnic genome-wide association study of cerebral white matter hyperintensities on MRI. |
| Disease/Trait | White matter hyperintensity burden |
| Initial sample | 17,936 European ancestry individuals, 1,943 African American ancestry individuals, 795 Hispanic individuals, 204 Chinese ancestry individuals, 201 Malay ancestry individuals |
| Replication sample | NA |
| Region | 2p16.1 |
| Chromosome id | chr2 |
| Chromosome position | 55907964 |
| Reported gene | EFEMP1 |
| Mapped gene | EFEMP1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 2202 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs78857879-A |
| SNPs | rs78857879 |
| Merged | |
| SNP id current | 78857879 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.1 |
| P value | 0.0000003 |
| Pvalue mlog | 6.52287874528033 |
| P value text | (EA) |
| Or beta | |
| %95 Ci | |
| Platform | Affymetrix, Illumina [14227402] (imputed) |
| CNV | N |
| Mapped trait | white matter hyperintensity measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005665 |
| Study accession | GCST003013 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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