SNP Detail For rs78852656
1.Mapping Information
Human SNP ID rs78852656
Human chromosome chr12
Human SNP position 119182192
Pig chromosome chr14
Pig SNP position 35699083
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitPR interval in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region12q24.23
Chromosome idchr12
Chromosome position119182192
Reported geneHSPB8
Mapped geneHSPB8
Upstream gene id
Downstream gene id
SNP gene ids26353
Upstream gene distance
Downstream gene distance
SNP risk allelers78852656-?
SNPsrs78852656
Merged0
SNP id current78852656
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitPR interval, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004462, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002279