SNP Detail For rs7869487
1.Mapping Information
Human SNP ID rs7869487
Human chromosome chr9
Human SNP position 114818634
Pig chromosome chr1
Pig SNP position 286478342
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region9q32
Chromosome idchr9
Chromosome position114818634
Reported geneNR
Mapped geneTNFSF15 - TNFSF8
Upstream gene id9966
Downstream gene id944
SNP gene ids
Upstream gene distance12506
Downstream gene distance74709
SNP risk allelers7869487-?
SNPsrs7869487
Merged
SNP id current7869487
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value7E-19
Pvalue mlog18.1549019599857
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044