SNP Detail For rs78683678
1.Mapping Information
Human SNP ID rs78683678
Human chromosome chr2
Human SNP position 152892854
Pig chromosome chr15
Pig SNP position 67497209
2.Annotation Information
PubMed ID24159190
JournalEur Heart J
Linkwww.ncbi.nlm.nih.gov/pubmed/24159190
StudyGenome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.
Disease/TraitAsymmetrical dimethylarginine levels
Initial sample5110 European ancestry individuals
Replication sampleNA
Region2q23.3
Chromosome idchr2
Chromosome position152892854
Reported geneintergenic
Mapped geneUBQLN4P2 - LOC105373691
Upstream gene id100131393
Downstream gene id105373691
SNP gene ids
Upstream gene distance14124
Downstream gene distance66082
SNP risk allelers78683678-T
SNPsrs78683678
Merged0
SNP id current78683678
Contextintergenic_variant
Intergenic1
Allele frequency0.09
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.168
%95 Ci[0.095-0.241] unit decrease
PlatformAffymetrix, Illumina [10085758] (imputed)
CNVN
Mapped traitasymmetrical dimethylarginine measurement, serum dimethylarginine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006522, http://www.ebi.ac.uk/efo/EFO_0005418
Study accessionGCST002241