Human SNP ID | rs78683678 |
---|---|
Human chromosome | chr2 |
Human SNP position | 152892854 |
Pig chromosome | chr15 |
Pig SNP position | 67497209 |
PubMed ID | 24159190 |
---|---|
Journal | Eur Heart J |
Link | www.ncbi.nlm.nih.gov/pubmed/24159190 |
Study | Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality. |
Disease/Trait | Asymmetrical dimethylarginine levels |
Initial sample | 5110 European ancestry individuals |
Replication sample | NA |
Region | 2q23.3 |
Chromosome id | chr2 |
Chromosome position | 152892854 |
Reported gene | intergenic |
Mapped gene | UBQLN4P2 - LOC105373691 |
Upstream gene id | 100131393 |
Downstream gene id | 105373691 |
SNP gene ids | |
Upstream gene distance | 14124 |
Downstream gene distance | 66082 |
SNP risk allele | rs78683678-T |
SNPs | rs78683678 |
Merged | 0 |
SNP id current | 78683678 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.09 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.168 |
%95 Ci | [0.095-0.241] unit decrease |
Platform | Affymetrix, Illumina [10085758] (imputed) |
CNV | N |
Mapped trait | asymmetrical dimethylarginine measurement, serum dimethylarginine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006522, http://www.ebi.ac.uk/efo/EFO_0005418 |
Study accession | GCST002241 |