SNP Detail For rs78649275
1.Mapping Information
Human SNP ID rs78649275
Human chromosome chr1
Human SNP position 21150540
Pig chromosome chr6
Pig SNP position 73605031
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region1p36.12
Chromosome idchr1
Chromosome position21150540
Reported geneEIF4G3
Mapped geneEIF4G3
Upstream gene id
Downstream gene id
SNP gene ids8672
Upstream gene distance
Downstream gene distance
SNP risk allelers78649275-T
SNPsrs78649275
Merged
SNP id current78649275
Contextintron_variant
Intergenic0
Allele frequency0.01
P value0.00000004
Pvalue mlog7.39794000867203
P value text(EA)
Or beta0.5951
%95 Ci[0.39-0.8] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075