SNP Detail For rs7861820
1.Mapping Information
Human SNP ID rs7861820
Human chromosome chr9
Human SNP position 106174393
Pig chromosome chr1
Pig SNP position 277353434
2.Annotation Information
PubMed ID19448621
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19448621
StudyGenome-wide association studies identify loci associated with age at menarche and age at natural menopause.
Disease/TraitMenarche and menopause (age at onset)
Initial sample17,438 European ancestry female individuals
Replication sampleNA
Region9q31.2
Chromosome idchr9
Chromosome position106174393
Reported geneintergenic
Mapped geneLOC105376201 - LOC105376202
Upstream gene id105376201
Downstream gene id105376202
SNP gene ids
Upstream gene distance133043
Downstream gene distance136048
SNP risk allelers7861820-C
SNPsrs7861820
Merged0
SNP id current7861820
Contextintron_variant
Intergenic1
Allele frequency0.48
P value0.000000003
Pvalue mlog8.52287874528033
P value text(age at menarche)
Or beta0.09
%95 Ci[0.06-0.12] years decrease
PlatformIllumina [317759]
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST000403