Human SNP ID | rs7861820 |
---|---|
Human chromosome | chr9 |
Human SNP position | 106174393 |
Pig chromosome | chr1 |
Pig SNP position | 277353434 |
PubMed ID | 19448621 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19448621 |
Study | Genome-wide association studies identify loci associated with age at menarche and age at natural menopause. |
Disease/Trait | Menarche and menopause (age at onset) |
Initial sample | 17,438 European ancestry female individuals |
Replication sample | NA |
Region | 9q31.2 |
Chromosome id | chr9 |
Chromosome position | 106174393 |
Reported gene | intergenic |
Mapped gene | LOC105376201 - LOC105376202 |
Upstream gene id | 105376201 |
Downstream gene id | 105376202 |
SNP gene ids | |
Upstream gene distance | 133043 |
Downstream gene distance | 136048 |
SNP risk allele | rs7861820-C |
SNPs | rs7861820 |
Merged | 0 |
SNP id current | 7861820 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.48 |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | (age at menarche) |
Or beta | 0.09 |
%95 Ci | [0.06-0.12] years decrease |
Platform | Illumina [317759] |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST000403 |