Human SNP ID | rs78606339 |
---|---|
Human chromosome | chr5 |
Human SNP position | 166001974 |
Pig chromosome | chr16 |
Pig SNP position | 62480285 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 5q34 |
Chromosome id | chr5 |
Chromosome position | 166001974 |
Reported gene | NONE, TENM2 |
Mapped gene | RPL21P59 - RPL7P20 |
Upstream gene id | 100271174 |
Downstream gene id | 728843 |
SNP gene ids | |
Upstream gene distance | 96337 |
Downstream gene distance | 26510 |
SNP risk allele | rs78606339-T |
SNPs | rs78606339 |
Merged | |
SNP id current | 78606339 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.06 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | (EA) |
Or beta | 0.4614 |
%95 Ci | [0.28-0.64] unit increase |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |