SNP Detail For rs78606339
1.Mapping Information
Human SNP ID rs78606339
Human chromosome chr5
Human SNP position 166001974
Pig chromosome chr16
Pig SNP position 62480285
2.Annotation Information
PubMed ID26252872
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26252872
StudyVariations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level.
Disease/TraitCognitive decline rate in late mild cognitive impairment
Initial sample472 European ancestry cases, 47 cases
Replication sampleNA
Region5q34
Chromosome idchr5
Chromosome position166001974
Reported geneNONE, TENM2
Mapped geneRPL21P59 - RPL7P20
Upstream gene id100271174
Downstream gene id728843
SNP gene ids
Upstream gene distance96337
Downstream gene distance26510
SNP risk allelers78606339-T
SNPsrs78606339
Merged
SNP id current78606339
Contextintergenic_variant
Intergenic1
Allele frequency0.06
P value0.0000007
Pvalue mlog6.15490195998574
P value text(EA)
Or beta0.4614
%95 Ci[0.28-0.64] unit increase
PlatformIllumina [~ 9000000] (imputed)
CNVN
Mapped traitcognitive impairment, cognitive decline measurement
Mapped trait URIhttp://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710
Study accessionGCST003075