Human SNP ID | rs7850258 |
---|---|
Human chromosome | chr9 |
Human SNP position | 97786731 |
Pig chromosome | chr1 |
Pig SNP position | 267773674 |
PubMed ID | 21981779 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21981779 |
Study | Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies. |
Disease/Trait | Hypothyroidism |
Initial sample | 1,317 European ancestry cases, 5,053 European ancestry controls |
Replication sample | 263 European ancestry cases, 1,616 European ancestry controls |
Region | 9q22.33 |
Chromosome id | chr9 |
Chromosome position | 97786731 |
Reported gene | FOXE1 |
Mapped gene | PTCSC2, LOC105376169 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928337, 105376169 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7850258-? |
SNPs | rs7850258 |
Merged | 0 |
SNP id current | 7850258 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.65 |
P value | 0.000000004 |
Pvalue mlog | 8.39794000867203 |
P value text | (eMERGE) |
Or beta | 1.23 |
%95 Ci | [1.04-1.47] |
Platform | Illumina [522164] |
CNV | N |
Mapped trait | hypothyroidism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004705 |
Study accession | GCST001265 |