SNP Detail For rs7850258
1.Mapping Information
Human SNP ID rs7850258
Human chromosome chr9
Human SNP position 97786731
Pig chromosome chr1
Pig SNP position 267773674
2.Annotation Information
PubMed ID21981779
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21981779
StudyVariants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies.
Disease/TraitHypothyroidism
Initial sample1,317 European ancestry cases, 5,053 European ancestry controls
Replication sample263 European ancestry cases, 1,616 European ancestry controls
Region9q22.33
Chromosome idchr9
Chromosome position97786731
Reported geneFOXE1
Mapped genePTCSC2, LOC105376169
Upstream gene id
Downstream gene id
SNP gene ids101928337, 105376169
Upstream gene distance
Downstream gene distance
SNP risk allelers7850258-?
SNPsrs7850258
Merged0
SNP id current7850258
Contextintergenic_variant
Intergenic0
Allele frequency0.65
P value0.000000004
Pvalue mlog8.39794000867203
P value text(eMERGE)
Or beta1.23
%95 Ci[1.04-1.47]
PlatformIllumina [522164]
CNVN
Mapped traithypothyroidism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004705
Study accessionGCST001265