SNP Detail For rs7848647
1.Mapping Information
Human SNP ID rs7848647
Human chromosome chr9
Human SNP position 114806766
Pig chromosome chr1
Pig SNP position 286462133
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region9q32
Chromosome idchr9
Chromosome position114806766
Reported geneNR
Mapped geneTNFSF15 - TNFSF8
Upstream gene id9966
Downstream gene id944
SNP gene ids
Upstream gene distance638
Downstream gene distance86577
SNP risk allelers7848647-?
SNPsrs7848647
Merged
SNP id current7848647
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value3E-35
Pvalue mlog34.5228787452803
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043