Human SNP ID | rs7847271 |
---|---|
Human chromosome | chr9 |
Human SNP position | 115068533 |
Pig chromosome | chr1 |
Pig SNP position | 286765841 |
PubMed ID | 22219177 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/22219177 |
Study | A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. |
Disease/Trait | Prostate cancer (gene x gene interaction) |
Initial sample | 4,723 European ancestry cases, 4,792 European ancestry controls |
Replication sample | NA |
Region | 9q33.1 x 3q21.3 |
Chromosome id | chr9 x 3 |
Chromosome position | 115068533 x 128319530 |
Reported gene | TNC x EEFSEC |
Mapped gene | TNC x EEFSEC |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7847271-? x rs10934853-? |
SNPs | rs7847271 x rs10934853 |
Merged | 0 |
SNP id current | |
Context | intron_variant x intron_variant |
Intergenic | |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.4925 |
%95 Ci | [1.27-1.79] |
Platform | Affymetrix, Illumina [1117531] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001370 |