SNP Detail For rs7847271
1.Mapping Information
Human SNP ID rs7847271
Human chromosome chr9
Human SNP position 115068533
Pig chromosome chr1
Pig SNP position 286765841
2.Annotation Information
PubMed ID22219177
JournalCarcinogenesis
Linkwww.ncbi.nlm.nih.gov/pubmed/22219177
StudyA genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
Disease/TraitProstate cancer (gene x gene interaction)
Initial sample4,723 European ancestry cases, 4,792 European ancestry controls
Replication sampleNA
Region9q33.1 x 3q21.3
Chromosome idchr9 x 3
Chromosome position115068533 x 128319530
Reported geneTNC x EEFSEC
Mapped geneTNC x EEFSEC
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers7847271-? x rs10934853-?
SNPsrs7847271 x rs10934853
Merged0
SNP id current
Contextintron_variant x intron_variant
Intergenic
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.4925
%95 Ci[1.27-1.79]
PlatformAffymetrix, Illumina [1117531] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001370