Human SNP ID | rs7836436 |
---|---|
Human chromosome | chr8 |
Human SNP position | 119994589 |
Pig chromosome | chr4 |
Pig SNP position | 20064209 |
PubMed ID | 26039976 |
---|---|
Journal | Sci Rep |
Link | www.ncbi.nlm.nih.gov/pubmed/26039976 |
Study | Genome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations. |
Disease/Trait | HIV-1 viral setpoint |
Initial sample | 326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases |
Replication sample | NA |
Region | 8q24.12 |
Chromosome id | chr8 |
Chromosome position | 119994589 |
Reported gene | DEPDC6 |
Mapped gene | DEPTOR |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64798 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7836436-G |
SNPs | rs7836436 |
Merged | |
SNP id current | 7836436 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.05 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (Xin) |
Or beta | 1.401 |
%95 Ci | unit decrease |
Platform | Illumina [up to 528294] |
CNV | N |
Mapped trait | HIV-1 infection, HIV viral set point measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006319 |
Study accession | GCST002976 |