SNP Detail For rs7836436
1.Mapping Information
Human SNP ID rs7836436
Human chromosome chr8
Human SNP position 119994589
Pig chromosome chr4
Pig SNP position 20064209
2.Annotation Information
PubMed ID26039976
JournalSci Rep
Linkwww.ncbi.nlm.nih.gov/pubmed/26039976
StudyGenome-Wide Association Studies of HIV-1 Host Control in Ethnically Diverse Chinese Populations.
Disease/TraitHIV-1 viral setpoint
Initial sample326 Han Chinese ancestry cases, 58 Dai Chinese ancestry cases, 40 Jingpo Chinese ancestry cases, 83 Uygur Chinese ancestry cases, 11 Hui Chinese ancestry cases, 20 East Asian cases
Replication sampleNA
Region8q24.12
Chromosome idchr8
Chromosome position119994589
Reported geneDEPDC6
Mapped geneDEPTOR
Upstream gene id
Downstream gene id
SNP gene ids64798
Upstream gene distance
Downstream gene distance
SNP risk allelers7836436-G
SNPsrs7836436
Merged
SNP id current7836436
Contextintron_variant
Intergenic0
Allele frequency0.05
P value0.000003
Pvalue mlog5.52287874528033
P value text(Xin)
Or beta1.401
%95 Ciunit decrease
PlatformIllumina [up to 528294]
CNVN
Mapped traitHIV-1 infection, HIV viral set point measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006319
Study accessionGCST002976