Human SNP ID | rs7832232 |
---|---|
Human chromosome | chr8 |
Human SNP position | 38611785 |
Pig chromosome | chr15 |
Pig SNP position | 54886241 |
PubMed ID | 20686608 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/20686608 |
Study | Genome-wide association study of pancreatic cancer in Japanese population. |
Disease/Trait | Pancreatic cancer |
Initial sample | 991 Japanese ancestry cases, 5,209 Japanese ancestry controls |
Replication sample | NA |
Region | 8p11.22 |
Chromosome id | chr8 |
Chromosome position | 38611785 |
Reported gene | RNF5P1 |
Mapped gene | RNF5P1 - TACC1 |
Upstream gene id | 286140 |
Downstream gene id | 6867 |
SNP gene ids | |
Upstream gene distance | 10528 |
Downstream gene distance | 116401 |
SNP risk allele | rs7832232-A |
SNPs | rs7832232 |
Merged | 0 |
SNP id current | 7832232 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.45 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (recessive) |
Or beta | 1.45 |
%95 Ci | [1.24-1.71] |
Platform | Illumina [420236] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST000745 |