SNP Detail For rs7828089
1.Mapping Information
Human SNP ID rs7828089
Human chromosome chr8
Human SNP position 22406821
Pig chromosome chr14
Pig SNP position 7105021
2.Annotation Information
PubMed ID25648963
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25648963
StudyGenome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium.
Disease/TraitVerbal declarative memory
Initial sampleUp to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals
Replication sampleUp to 10,617 European ancestry individuals, up to 3,811 African American individuals
Region8p21.3
Chromosome idchr8
Chromosome position22406821
Reported geneSLC39A14, PPP3CC
Mapped geneSLC39A14
Upstream gene id
Downstream gene id
SNP gene ids23516
Upstream gene distance
Downstream gene distance
SNP risk allelers7828089-G
SNPsrs7828089
Merged0
SNP id current7828089
Contextintron_variant
Intergenic0
Allele frequency0.48
P value0.000002
Pvalue mlog5.69897000433601
P value text(ALL-dr, EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitword list delayed recall measurement, memory performance, paragraph delayed recall measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006805, http://www.ebi.ac.uk/efo/EFO_0004874, http://www.ebi.ac.uk/efo/EFO_0006806
Study accessionGCST002701
PubMed ID25648963
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25648963
StudyGenome-wide Studies of Verbal Declarative Memory in Nondemented Older People: The Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium.
Disease/TraitVerbal declarative memory
Initial sampleUp to 27,337 European ancestry individuals, up to 472 Korkulan individuals, up to 1,267 Erasmus Rucphen Family individuals
Replication sampleUp to 10,617 European ancestry individuals, up to 3,811 African American individuals
Region8p21.3
Chromosome idchr8
Chromosome position22406821
Reported geneSLC39A14, PPP3CC
Mapped geneSLC39A14
Upstream gene id
Downstream gene id
SNP gene ids23516
Upstream gene distance
Downstream gene distance
SNP risk allelers7828089-G
SNPsrs7828089
Merged0
SNP id current7828089
Contextintron_variant
Intergenic0
Allele frequency0.48
P value0.000002
Pvalue mlog5.69897000433601
P value text(ALL-dr)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traitword list delayed recall measurement, memory performance, paragraph delayed recall measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006805, http://www.ebi.ac.uk/efo/EFO_0004874, http://www.ebi.ac.uk/efo/EFO_0006806
Study accessionGCST002701