Human SNP ID | rs782590 |
---|---|
Human chromosome | chr2 |
Human SNP position | 55616277 |
Pig chromosome | chr3 |
Pig SNP position | 90437171 |
PubMed ID | 22399527 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22399527 |
Study | Genome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits. |
Disease/Trait | Metabolic syndrome |
Initial sample | 2,637 European ancestry cases, 7,927 European ancestry controls |
Replication sample | NA |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 55616277 |
Reported gene | SMEK2 |
Mapped gene | SMEK2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57223 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs782590-T |
SNPs | rs782590 |
Merged | 0 |
SNP id current | 782590 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.56 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (SBP) |
Or beta | 0.09 |
%95 Ci | [NR] mmHg increase |
Platform | Illumina [1257079] (imputed) |
CNV | N |
Mapped trait | metabolic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000195 |
Study accession | GCST001436 |