SNP Detail For rs782590
1.Mapping Information
Human SNP ID rs782590
Human chromosome chr2
Human SNP position 55616277
Pig chromosome chr3
Pig SNP position 90437171
2.Annotation Information
PubMed ID22399527
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22399527
StudyGenome-wide screen for metabolic syndrome susceptibility Loci reveals strong lipid gene contribution but no evidence for common genetic basis for clustering of metabolic syndrome traits.
Disease/TraitMetabolic syndrome
Initial sample2,637 European ancestry cases, 7,927 European ancestry controls
Replication sampleNA
Region2p16.1
Chromosome idchr2
Chromosome position55616277
Reported geneSMEK2
Mapped geneSMEK2
Upstream gene id
Downstream gene id
SNP gene ids57223
Upstream gene distance
Downstream gene distance
SNP risk allelers782590-T
SNPsrs782590
Merged0
SNP id current782590
Contextintron_variant
Intergenic0
Allele frequency0.56
P value0.00000004
Pvalue mlog7.39794000867203
P value text(SBP)
Or beta0.09
%95 Ci[NR] mmHg increase
PlatformIllumina [1257079] (imputed)
CNVN
Mapped traitmetabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST001436