SNP Detail For rs78242550
1.Mapping Information
Human SNP ID rs78242550
Human chromosome chr14
Human SNP position 28136480
Pig chromosome chr7
Pig SNP position 76276021
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region14q12
Chromosome idchr14
Chromosome position28136480
Reported geneIntergenic
Mapped geneLOC728755 - BNIP3P1
Upstream gene id728755
Downstream gene id319138
SNP gene ids
Upstream gene distance463259
Downstream gene distance127930
SNP risk allelers78242550-A
SNPsrs78242550
Merged0
SNP id current78242550
Contextintergenic_variant
Intergenic1
Allele frequency0.999
P value0.000002
Pvalue mlog5.69897000433601
P value text(AA)
Or beta0.284
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264