SNP Detail For rs78192384
1.Mapping Information
Human SNP ID rs78192384
Human chromosome chr18
Human SNP position 3041399
Pig chromosome chr6
Pig SNP position 96646636
2.Annotation Information
PubMed ID24159190
JournalEur Heart J
Linkwww.ncbi.nlm.nih.gov/pubmed/24159190
StudyGenome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.
Disease/TraitSymmetrical dimethylarginine levels
Initial sample5110 European ancestry individuals
Replication sampleNA
Region18p11.31
Chromosome idchr18
Chromosome position3041399
Reported geneNR
Mapped geneLPIN2 - MYOM1
Upstream gene id9663
Downstream gene id8736
SNP gene ids
Upstream gene distance28084
Downstream gene distance25408
SNP risk allelers78192384-A
SNPsrs78192384
Merged0
SNP id current78192384
Contextintergenic_variant
Intergenic1
Allele frequency0.03
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta0.27
%95 Ci[0.15-0.39] unit decrease
PlatformAffymetrix, Illumina [10085758] (imputed)
CNVN
Mapped traitserum dimethylarginine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005418
Study accessionGCST002239