Human SNP ID | rs78170588 |
---|---|
Human chromosome | chr2 |
Human SNP position | 134450700 |
Pig chromosome | chr15 |
Pig SNP position | 20027096 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 2q21.3 |
Chromosome id | chr2 |
Chromosome position | 134450700 |
Reported gene | MGAT5 |
Mapped gene | MGAT5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4249 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs78170588-A |
SNPs | rs78170588 |
Merged | 0 |
SNP id current | 78170588 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.993 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (AA) |
Or beta | 0.096 |
%95 Ci | unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003264 |