SNP Detail For rs78170588
1.Mapping Information
Human SNP ID rs78170588
Human chromosome chr2
Human SNP position 134450700
Pig chromosome chr15
Pig SNP position 20027096
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region2q21.3
Chromosome idchr2
Chromosome position134450700
Reported geneMGAT5
Mapped geneMGAT5
Upstream gene id
Downstream gene id
SNP gene ids4249
Upstream gene distance
Downstream gene distance
SNP risk allelers78170588-A
SNPsrs78170588
Merged0
SNP id current78170588
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.993
P value0.000003
Pvalue mlog5.52287874528033
P value text(AA)
Or beta0.096
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264